When Kyle is with Tom Foss at the warehouse, Foss offers Kyle a ride home. Kyle responds that it's easier if he just runs home. As he leaves, it's still light out. In the next scene, he's running on the sidewalk, and it's pitch black out.
When Nicole Trager asks Lori about Kyle's whereabouts, she responds that he took off after school, but in the previous scene, she saw him at the coffee shop and she left before he did (so she didn't see him "take off" from anywhere).