Agent Todd, on finding the body of Lane Harrison, says that Harrison "didn't kill those two guys in Seattle" - there were three murders, as confirmed by Abby in the lab, and Todd when Ducky is examining the body.
When Tony and the con leave the gas station after using the pay phone, Tony can be seen kick-starting the motorcycle. The Kawasaki KLR650 that they are riding is electric-start only where as the inserted shot of the kick-start is of a Honda XR400.
When Tony and the con are chained together, they change their clothes after they fall in the water. They ripped the arms of the shirts and it shows Tony using a pin to pin it back together and you can clearly see all the pins on both of the arms of their shirts.
The team visits a storage facility that is supposedly in Lynchburg, VA, across from Walmart. There is only one Walmart in Lynchburg and it is across the street from Liberty University.